TY - JOUR
T1 - Sensitivity analysis for studying the relation between biochemical reactions and metabolic phenotypes
AU - Maj, Carlo
AU - Mosca, Ettore
AU - Merelli, Ivan
AU - Mauri, Giancarlo
AU - Milanesi, Luciano
PY - 2013/2
Y1 - 2013/2
N2 - Metabolic models are the most widespread type of models in systems biology and are currently used in several applications, including metabolic engineering and investigations of pathological states in which metabolic disorders play a relevant role. Once a model has been defined and corroborated, sensitivity analysis techniques can be used to study the model behavior in relation to perturbations of the model parameters. Here, we describe how it is possible to combine regionalized sensitivity analysis and response surface methodology to screen and quantitatively characterize the relation between metabolic phenotypes and biochemical reactions rates. By means of this approach, we identified the most important reactions for the citric acid efflux from mitochondria, one of the key metabolic traits of cancer cells.
AB - Metabolic models are the most widespread type of models in systems biology and are currently used in several applications, including metabolic engineering and investigations of pathological states in which metabolic disorders play a relevant role. Once a model has been defined and corroborated, sensitivity analysis techniques can be used to study the model behavior in relation to perturbations of the model parameters. Here, we describe how it is possible to combine regionalized sensitivity analysis and response surface methodology to screen and quantitatively characterize the relation between metabolic phenotypes and biochemical reactions rates. By means of this approach, we identified the most important reactions for the citric acid efflux from mitochondria, one of the key metabolic traits of cancer cells.
KW - Metabolic model
KW - mitochondrion
KW - sensitivity analysis
UR - http://www.scopus.com/inward/record.url?scp=84874796907&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84874796907&partnerID=8YFLogxK
U2 - 10.1142/S0219720013400027
DO - 10.1142/S0219720013400027
M3 - Article
C2 - 23427984
AN - SCOPUS:84874796907
SN - 0219-7200
VL - 11
JO - Journal of Bioinformatics and Computational Biology
JF - Journal of Bioinformatics and Computational Biology
IS - 1
M1 - 1340002
ER -